I'm going to attempt to go through with a full bot team to try to update the instance list. So far, none of the lowest four dungeons are satisfactory except Ragefire Chasm for which I'm using my own profile. These issues have been posted and Highvoltz has said he is going to go back to the lower level dungeons soon.
To summarise so far:
Ragefire Chasm - default profile is still the old version of RFC, there are new bosses now. The profile will run fully afkable though may skip the second and/or third bosses on occasion, and then run up the ramp after the dungeon is completed. Occasionally, a toon will run into the lava pool around Slagmaw and die. This looks like a mesh/pathing issue. My new profile, updated for the new dungeon, is attached and should be fully afkable apart from that last issue. Tested with every class/role except a DK tank.
Deadmines - won't target Helix Gearbreaker. Many problems with pathing into and out of the water around the boat, especially with monks it seems.
Shadowfang Keep - afkable up to Lord Walden with no issues. Runs into the second gate. This one has a wait point in the wrong location, easily amended. Much more serious is the tank then runs straight through and into the door before Lord Godfrey, completely ignoring the mobs on the stairs and in the last room. Frequent wipes. Should the tank survive it then pulls the two mobs before Lord Godfrey, then runs back to Lord Walden's room before returning for the final boss.
Wailing Caverns - another no go, tries to start the escort quest before killing any bosses.
I'm going to try Wailing Caverns with a script edited without the last boss to check the rest of the dungeon logic. Should Dungeon Buddy be started after the bosses have been killed the escort quest runs as intended.