seems to happen to me also, but only if I have "catch pokemon" checked, if I uncheck it it will loot all the stops that show in the map
havent checked to see if the transfer pokemon box affects it
yup just did, was on .65 updated to .68
If logic is set to catch pokemon, loot stops and transfer pokemon, it will only catch and transfer (on .68 this does work initially then it just stops looting, the pattern I see is if there are no ? in the map it will loot stops, if a ? pops up it will automatically go to the poke and not look any stops in the way to the ?)
If logic is set to loot stops and transfer pokemon, it will loot and transfer
If logic is set to catch and loot stops it will catch and loot