Here's what I see happening in your log file:
Ran thru Golden Lotus, swapper moved to Tillers
Ran thru Tillers, MANUAL STOP from user.
User restarted, Tillers restarted by bot, MANUAL STOP from user.
User changed to Cloud Serpent, bot started Cloud Serpent, PROFILE SWAPPER STILL THINKS ITS ON TILLERS.
Ran thru Cloud Serpent, swapper moved to Cloud Serpent (thinking it was still on Tillers), MANUAL STOP from user.
Lost track after this point, but i did see the swapper move to Anglers at one point after too.
Here's how to prevent this issue from occuring again:
1) Any time you stop the bot manually, simply restart the bot WITHOUT swapping profiles. If you DO swap profiles manually, you MUST adjust the plugin's settings, resave, and possibly even reset HB. Moral of story: don't manually change profiles during a run. I have constructed the profiles smartly: they will determine whether or not you have quests to do. If you have none, it flys to the hub to confirm start. If none available, its done, and triggers Profile Swapper to move on.
2) You did have cache issue popups during your run. Make sure you have deleted the cache folder before each run. This is not to say it wasn't just from restarting the bot midway, which can happen, but just a friendly reminder.
Try again tomorrow. Let it run its course. If you do need to stop, simply restart without swapping profiles manually, and it should pick up where it left off. Even if it does need to make 1 extra flight, it will maintain its near afk-ability. (Under perfect operation, I can guarantee 99% afk-ability. The 1% is usually either user error, a true bug, or unforseen consequences of some kind of game changes).
Good Luck