We can't provide support for programs that do this in general, because it affects the client, which in turns affects the bot, but one thing you can try is (closing all EBs first) opening the "Settings/Global/GlobalSettings.json" file and editing:
"HookCompatibilityDepth": 8,
to
"HookCompatibilityDepth": 13,
and
"HookCompatibility1": false,
to
"HookCompatibility1": true,
Save and try the bot again along with the program. These changes will try to avoid doing the same thing programs like Dxtory do to hook DirectX.