Cut and Paste from kagami's post:
Things that must be done manually:
Dungeons/Trials
Rebornbuddy does not have a dungeon bot at this time, and there are numerous dungeons and trials which must be done in the Main Scenario questline. When the bot encounters one of these dungeons or trials, it will do all the quests it can until it can do nothing further, and will then stop until you do the dungeon manually. After you've done the dungeon, please start the bot from wherever it ends up after the dungeon - the profile is designed to start immediately after completing the dungeon.
Chocobo Stuff
This profile will automatically train your chocobo for you as soon as it can, both for mounting and for the chocobo combat companion. However, currently you must manually buy the Chocobo Issuance and name your chocobo. The bot will stop and prompt you to do these things, after which you can restart it and it will take care of the rest. We recommend using a combat routine that supports the chocobo companion, and turning it on ASAP. The chocobo will make soloing harder quests much easier and is simply a good companion to have. In addition, this profile does not automatically assign points to your chocobo's skills - it leaves those decisions up to you. Please periodically check on your chocobo's skills and assign SP as necessary.
Bonus Attributes
This profile does not automatically assign the bonus attributes your character gains as it levels up. You'll accumulate quite a lot of them on your quest to level 50, and we recommend assigning them as soon as possible. They can provide a significant boost in combat and can help your bot die less often.