There are a number of issues with Strand of the Ancients having to do with the gates. Also, when defending, it will occasionally perch on the top of one of the towers and be unable to navigate to the beach. BGBot is still in Beta and is clearly marked as such in the Honorbuddy client meaning that there are a number of unresolved issues with it. SotA and WSG are battlegrounds that have a proportionally larger number of problems. Please keep an eye on the release notes that accompany each release of HonorBuddy, when these issues are resolved, it will be documented.
Additionally, if your log files are too large to post here, it is suggested that you compress them using either a file compression application (e.g. WinZip or WinRAR) or using the Windows native compression mechanism (Right-Click the log file > Send To > Compressed Folder). No one wants to go to a 3rd-party website and wait 30 seconds to download your log file.